PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G01510.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 316aa    MW: 35517.5 Da    PI: 10.277
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G01510.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.16.2e-3095145151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                      krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s
  ORUFI03G01510.2  95 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFAS 145
                      79***********************************************86 PP

2K-box707.4e-24164257699
            K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      g+++ +++ e+ + +++ L k++e L++ +R+llGe+L+++s++eL++Le +Le+sl +iR +K++ll eq+ +l++ke +l+++n++Lr+k +
  ORUFI03G01510.2 164 GNKTVQQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREKCK 257
                      4557788899*********************************************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.8E-4187146IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.73587147IPR002100Transcription factor, MADS-box
PROSITE patternPS00350089143IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-3389170IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-3089109IPR002100Transcription factor, MADS-box
CDDcd002652.72E-4289160No hitNo description
PfamPF003193.8E-2796143IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-30109124IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-30124145IPR002100Transcription factor, MADS-box
PfamPF014865.3E-24169257IPR002487Transcription factor, K-box
PROSITE profilePS5129713.413172262IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000060Biological Processprotein import into nucleus, translocation
GO:0009409Biological Processresponse to cold
GO:0009739Biological Processresponse to gibberellin
GO:0009911Biological Processpositive regulation of flower development
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MTIKNGNATA RTPPVAVCLC LPLPRGGVAT TRTKGNGNTR RDQKGKPRRR GRGEKGEGVG  60
EKEERASSFG YGQTLQRLHH HSLPFLMVRG KTQMKRIENP TSRQVTFSKR RNGLLKKAFE  120
LSVLCDAEVA LIVFSPRGKL YEFASASTQK TIERYRTYTK ENIGNKTVQQ DIEQVKADAD  180
GLAKKLEALE TYKRKLLGEK LDECSIEELH SLEVKLERSL ISIRGRKTKL LEEQVAKLRE  240
KEMKLRKDNE ELREKCKNQP PLSAPLTVRA EDENPDRNIN TTNDNMDVET ELFIGLPGRS  300
RSSGGAAEDS QAMSHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A7e-1989158271Myocyte-specific enhancer factor 2A
3kov_B7e-1989158271Myocyte-specific enhancer factor 2A
3kov_I7e-1989158271Myocyte-specific enhancer factor 2A
3kov_J7e-1989158271Myocyte-specific enhancer factor 2A
3p57_A7e-1989158271Myocyte-specific enhancer factor 2A
3p57_B7e-1989158271Myocyte-specific enhancer factor 2A
3p57_C7e-1989158271Myocyte-specific enhancer factor 2A
3p57_D7e-1989158271Myocyte-specific enhancer factor 2A
3p57_I7e-1989158271Myocyte-specific enhancer factor 2A
3p57_J7e-1989158271Myocyte-specific enhancer factor 2A
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00076ChIP-chipTransfer from AT2G45660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8300370.0CT830037.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA030D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630979.11e-165PREDICTED: MADS-box transcription factor 50
SwissprotQ9XJ601e-167MAD50_ORYSJ; MADS-box transcription factor 50
TrEMBLA0A0E0NNZ40.0A0A0E0NNZ4_ORYRU; Uncharacterized protein
STRINGORGLA03G0015400.11e-161(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14133379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.12e-71AGAMOUS-like 20